Editing Publications using Octave
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=Articles= | |||
The following list contains articles that used GNU Octave. | |||
Older articles were collected automatically and they might | |||
appear in the list only because they cite the | |||
[http://www.gnu.org/software/octave/doc/interpreter/index.html GNU Octave Manual], | |||
we are checking these publications manually. | |||
== Pre-prints == | == Pre-prints == | ||
* Preprint arXiv:1108.3206v2 [http://arxiv.org/abs/1108.3206 Modeling and frequency domain analysis of nonlinear compliant joints for a passive dynamic swimmer] | * Preprint arXiv:1108.3206v2 [http://arxiv.org/abs/1108.3206 Modeling and frequency domain analysis of nonlinear compliant joints for a passive dynamic swimmer] | ||
* Technical Report UBLCS-2012-02 [http://www.informatica.unibo.it/ricerca/technical-report/2012/UBLCS-2012-02 Queueing Networks Analysis with the qnetworks Toolbox] | * Technical Report UBLCS-2012-02 [http://www.informatica.unibo.it/ricerca/technical-report/2012/UBLCS-2012-02 Queueing Networks Analysis with the qnetworks Toolbox] | ||
* Preprint arXiv:1109.0397 [http://arxiv.org/abs/1109.0397 Auction-Based Resource Allocation in Digital Ecosystems] ([http://www.moreno.marzolla.name/publications/papers/1109.0397v1.zip Scripts] used in the paper) | * Preprint arXiv:1109.0397 [http://arxiv.org/abs/1109.0397 Auction-Based Resource Allocation in Digital Ecosystems] ([http://www.moreno.marzolla.name/publications/papers/1109.0397v1.zip Scripts] used in the paper) | ||
* Technical Report UBLCS-2011-04 [http://www.informatica.unibo.it/ricerca/technical-report/2011/UBLCS-2011-04 Dynamic Power Management for QoS-Aware Applications] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2011-04.tar.gz Scripts] and data files used in the paper) | * Technical Report UBLCS-2011-04 [http://www.informatica.unibo.it/ricerca/technical-report/2011/UBLCS-2011-04 Dynamic Power Management for QoS-Aware Applications] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2011-04.tar.gz Scripts] and data files used in the paper) | ||
* Preprint arXiv:1104.5392 [http://arxiv.org/abs/1104.5392 A Framework for QoS-aware Execution of Workflows over the Cloud], to appear in proc. CLOSER 2012 ([http://www.moreno.marzolla.name/publications/papers/1104.5392v1.m Script] used in the paper) | * Preprint arXiv:1104.5392 [http://arxiv.org/abs/1104.5392 A Framework for QoS-aware Execution of Workflows over the Cloud], to appear in proc. CLOSER 2012 ([http://www.moreno.marzolla.name/publications/papers/1104.5392v1.m Script] used in the paper) | ||
* Technical Report UBLCS-2010-12 [http://www.informatica.unibo.it/ricerca/technical-report/2010/UBLCS-2010-12 Dynamic Scalability for Next Generation Gaming Infrastructures], to appear in ACM Computers in Entertainment ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-12.m Script] used in the paper) | * Technical Report UBLCS-2010-12 [http://www.informatica.unibo.it/ricerca/technical-report/2010/UBLCS-2010-12 Dynamic Scalability for Next Generation Gaming Infrastructures], to appear in ACM Computers in Entertainment ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-12.m Script] used in the paper) | ||
== 2012 == | == 2012 == | ||
* Journal of Process Control, 2012, [http://dx.doi.org/10.1016/j.jprocont.2012.04.006 GNU Octave and reproducible research] | |||
* Journal of Process Control, 2012, [http://dx.doi.org/10.1016/j.jprocont.2012.04.006 GNU Octave and reproducible research] | * Comput. Methods Appl. Mech. Engrg., 2012, [http://dx.doi.org/10.1016/j.cma.2012.06.018 Multiscale Modeling and Simulation of Organic Solar Cells] (Also available [http://arxiv.org/abs/1206.1440 at arXiv]) | ||
* 12th Int. Conf. on Adaptive Behaviour (2012). [http://arxiv.org/abs/1205.3668 Synthesis and Adaptation of Effective Motor Synergies for the Solution of Reaching Tasks]. ([https://files.ifi.uzh.ch/ailab/people/carbajal/DRD/drd.html package] used for this publication) | |||
* Comput. Methods Appl. Mech. Engrg., 2012, [http://dx.doi.org/10.1016/j.cma.2012.06.018 Multiscale Modeling and Simulation of Organic Solar Cells] (Also available [http://arxiv.org/abs/1206.1440 at arXiv]) | * Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.190311.270112a System reduction using an LQR-inspired version of Optimal Replacement Variables] | ||
* 12th Int. Conf. on Adaptive Behaviour (2012). [http://arxiv.org/abs/1205.3668 Synthesis and Adaptation of Effective Motor Synergies for the Solution of Reaching Tasks].([https://files.ifi.uzh.ch/ailab/people/carbajal/DRD/drd.html package] used for this publication) | * Journal of Computational and Applied Mathematics [http://dx.doi.org/10.1016/j.cam.2012.03.014 A Test Set for stiff Initial Value Problem Solvers in the open source software R: Package deTestSet] | ||
* Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.190311.270112a System reduction using an LQR-inspired version of Optimal Replacement Variables] | * Biophysical Journal [http://dx.doi.org/10.1016/j.bpj.2012.04.051 Locomotion control of Caenorhabditis elegans through confinement] | ||
* Biophysical Journal [http://dx.doi.org/10.1016/j.bpj.2012.04.051 Locomotion control of Caenorhabditis elegans through confinement] | * Behavior Research Methods [http://dx.doi.org/10.3758/s13428-011-0168-7 OpenSesame: An open-source, graphical experiment builder for the social sciences] | ||
* Simulation Modelling Practice and Theory [http://dx.doi.org/10.1016/j.simpat.2012.02.005 Development and implementation of hydro turbine and governor models in a free and open source software package] | * Journal of Neural Engineering [http://dx.doi.org/10.1088/1741-2560/9/3/036008 Stimulus specificity of a steady-state visual-evoked potential-based brain-computer interface] | ||
* Journal of Biomechanical Engineering [http://dx.doi.org/10.1115/1.4005849 Syrinx fluid transport: Modeling pressure-wave-induced flux across the spinal pial membrane] | * Nuclear Fusion [http://dx.doi.org/10.1088/0029-5515/52/6/063008 Detection of geodesic acoustic mode oscillations, using multiple signal classification analysis of Doppler backscattering signal on Tore Supra] | ||
* Journal of Chemical Theory and Computation [http://dx.doi.org/10.1021/ct200911w Construction of the free energy landscape of peptide aggregation from molecular dynamics simulations] | * Simulation Modelling Practice and Theory [http://dx.doi.org/10.1016/j.simpat.2012.02.005 Development and implementation of hydro turbine and governor models in a free and open source software package] | ||
* Modern Physics Letters B [http://dx.doi.org/10.1142/S0217984912500558 Dynamics on multilayered hyperbranched fractals through continuous time random walks] | * Journal of Biomechanical Engineering [http://dx.doi.org/10.1115/1.4005849 Syrinx fluid transport: Modeling pressure-wave-induced flux across the spinal pial membrane] | ||
* IEEE Nuclear Science Symposium Conference Record [http://dx.doi.org/10.1109/NSSMIC.2011.6153827 Dose-free monitoring of radiotherapy treatments with scattered photons: First experimental results at a 6-MV Linac] | * Biochemistry [http://dx.doi.org/10.1021/bi3002709 Testing the nearest neighbor model for canonical RNA base pairs: Revision of GU parameters] | ||
* Journal of Physics: Conference Series [http://dx.doi.org/10.1088/1742-6596/341/1/012032 Integration of a neuroimaging processing pipeline into a pan-canadian computing grid] | * Journal of Chemical Theory and Computation [http://dx.doi.org/10.1021/ct200911w Construction of the free energy landscape of peptide aggregation from molecular dynamics simulations] | ||
* Journal of Nanomaterials [http://dx.doi.org/10.1155/2012/109238 Design and construction of a one-dimensional DNA track for an artificial molecular motor] | * Modern Physics Letters B [http://dx.doi.org/10.1142/S0217984912500558 Dynamics on multilayered hyperbranched fractals through continuous time random walks] | ||
* Computing in Science and Engineering [http://dx.doi.org/10.1109/MCSE.2012.18 Applications of computational science: Data-intensive computing for student projects] | * IEEE Nuclear Science Symposium Conference Record [http://dx.doi.org/10.1109/NSSMIC.2011.6153827 Dose-free monitoring of radiotherapy treatments with scattered photons: First experimental results at a 6-MV Linac] | ||
* Advances in OptoElectronics [http://dx.doi.org/10.1155/2012/782150 Fundamental issues in manufacturing photovoltaic modules beyond the current generation of materials] | * Journal of Physics: Conference Series [http://dx.doi.org/10.1088/1742-6596/341/1/012032 Integration of a neuroimaging processing pipeline into a pan-canadian computing grid] | ||
* IEEE Transactions on Fuzzy Systems [http://dx.doi.org/10.1109/TFUZZ.2011.2168406 Zadehs extension principle for continuous functions of non-interactive variables: A parallel optimization approach] | * Journal of Nanomaterials [http://dx.doi.org/10.1155/2012/109238 Design and construction of a one-dimensional DNA track for an artificial molecular motor] | ||
* Methods in Enzymology [http://dx.doi.org/10.1016/B978-0-12-391857-4.00020-3 Open source tools for fluorescent imaging] | * Computing in Science and Engineering [http://dx.doi.org/10.1109/MCSE.2012.18 Applications of computational science: Data-intensive computing for student projects] | ||
* Computer Physics Communications [http://dx.doi.org/10.1016/j.cpc.2011.08.003 An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells] | * Computer Physics Communications [http://dx.doi.org/10.1016/j.cpc.2011.11.022 Numerical tools to validate stationary points of so (8) -gauged N = 8 D = 4 supergravity] | ||
* Advances in OptoElectronics [http://dx.doi.org/10.1155/2012/782150 Fundamental issues in manufacturing photovoltaic modules beyond the current generation of materials] | |||
* IEEE Transactions on Fuzzy Systems [http://dx.doi.org/10.1109/TFUZZ.2011.2168406 Zadehs extension principle for continuous functions of non-interactive variables: A parallel optimization approach] | |||
* Methods in Enzymology [http://dx.doi.org/10.1016/B978-0-12-391857-4.00020-3 Open source tools for fluorescent imaging] | |||
* Computer Physics Communications [http://dx.doi.org/10.1016/j.cpc.2011.08.003 An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells] | |||
== 2011 == | == 2011 == | ||
* Phys. Rev. E 83, 066707 (2011), [http://link.aps.org/doi/10.1103/PhysRevE.83.066707 Exploiting the passive dynamics of a compliant leg to develop gait transitions] | * Phys. Rev. E 83, 066707 (2011), [http://link.aps.org/doi/10.1103/PhysRevE.83.066707 Exploiting the passive dynamics of a compliant leg to develop gait transitions] | ||
* Journal of Fluid Mechanics, volume 681, (2011), pp. 622-638. [http://www.math.missouri.edu/~stephen/preprints/jeff-stokes.html Perturbations of the coupled Jeffery-Stokes equations] | * Journal of Fluid Mechanics, volume 681, (2011), pp. 622-638. [http://www.math.missouri.edu/~stephen/preprints/jeff-stokes.html Perturbations of the coupled Jeffery-Stokes equations]. | ||
* International Journal for Numerical Methods in Fluids, 65(11-12):1407–1422, 2011 [http://dx.doi.org/10.1002/fld.2337 Isogeometric analysis: Stable elements for the 2d stokes equation] | * International Journal for Numerical Methods in Fluids, 65(11-12):1407–1422, 2011 [http://dx.doi.org/10.1002/fld.2337 Isogeometric analysis: Stable elements for the 2d stokes equation]. | ||
* Numerical Algorithms, 56(1):107–127, January 2011, [http://dx.doi.org/10.1007/s11075-010-9376-y A parameter robust Petrov-Galerkin scheme for advection-diffusion-reaction equations] | * Numerical Algorithms, 56(1):107–127, January 2011, [http://dx.doi.org/10.1007/s11075-010-9376-y A parameter robust Petrov-Galerkin scheme for advection-diffusion-reaction equations]. | ||
* Advances in Engineering Software, 42(12):1020–1034, 2011, [http://dx.doi.org/10.1016/j.advengsoft.2011.06.010 Geopdes: A research tool for IsoGeometric Analysis of PDEs]. ([http://geopdes.sf.net Octave package] discussed in this publication) | * Advances in Engineering Software, 42(12):1020–1034, 2011, [http://dx.doi.org/10.1016/j.advengsoft.2011.06.010 Geopdes: A research tool for IsoGeometric Analysis of PDEs]. ([http://geopdes.sf.net Octave package] used discussed in this publication) | ||
* Int. J. of Performability Engineering, 7(5):479–492, 2011 [http://www.ijpe-online.com/september-2011-p7-parsy-performance-aware-reconfiguration-of-software-systems.html PARSY: Performance-Aware Reconfiguration of Software Systems] | * Int. J. of Performability Engineering, 7(5):479–492, 2011 [http://www.ijpe-online.com/september-2011-p7-parsy-performance-aware-reconfiguration-of-software-systems.html PARSY: Performance-Aware Reconfiguration of Software Systems] | ||
* IEEE Trans. Antennas and Propagation, 59(6):2047-2057, 2011, [http://dx.doi.org/10.1109/TAP.2011.2122231 Demonstration of a Dual-Polarized Phased-Array Feed] | * IEEE Trans. Antennas and Propagation, 59(6):2047-2057, 2011, [http://dx.doi.org/10.1109/TAP.2011.2122231 Demonstration of a Dual-Polarized Phased-Array Feed]. | ||
* IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum [http://dx.doi.org/10.1109/IPDPS.2011.389 p2 Matlab: Productive parallel matlab for the exascale] | |||
* Journal of Machine Learning Research [http://www.stanford.edu/~ngoodman/papers/WSG-AIStats11.pdf Lightweight implementations of probabilistic programming languages via transformational compilation] | * IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum [http://dx.doi.org/10.1109/IPDPS.2011.389 p2 Matlab: Productive parallel matlab for the exascale] | ||
* Physics of Fluids [http://dx.doi.org/10.1063/1.3662449 Relaminarisation of Re τ = 100 channel flow with globally stabilising linear feedback control] | |||
* Journal of Machine Learning Research [http://www.stanford.edu/~ngoodman/papers/WSG-AIStats11.pdf Lightweight implementations of probabilistic programming languages via transformational compilation] | |||
* Proceedings of the ASME Design Engineering Technical Conference [http://dx.doi.org/10.1115/DETC2011-48228 uBlasCL: Architecture agnostic massively parallel Linear Algebra system] | * Proceedings of the ASME Design Engineering Technical Conference [http://dx.doi.org/10.1115/DETC2011-48228 uBlasCL: Architecture agnostic massively parallel Linear Algebra system] | ||
* Proceedings - 2011 IEEE Electronics, Robotics and Automotive Mechanics Conference, CERMA 2011 [http://dx.doi.org/10.1109/CERMA.2011.28 Analysis of AVI files for mice behavior experiments in the Morris water maze] | * <font color="red">SEKE 2011 - Proceedings of the 23rd International Conference on Software Engineering and Knowledge Engineering [ SC-xScript: An embedded script language for scientific computation in embedded systems]</font> | ||
* Earthquake and Structures [http://md1.csa.com/partners/viewrecord.php?requester=gs&collection=TRD&recid=16153490EQ Reconstruction of missing response data for identification of higher modes] | * Proceedings - 2011 IEEE Electronics, Robotics and Automotive Mechanics Conference, CERMA 2011 [http://dx.doi.org/10.1109/CERMA.2011.28 Analysis of AVI files for mice behavior experiments in the Morris water maze] | ||
* 2011 IEEE International Conference on Robotics and Biomimetics, ROBIO 2011 [http://dx.doi.org/10.1109/ROBIO.2011.6181612 From walking to running a natural transition in the SLIP model using the hopping gait] | * Earthquake and Structures [http://md1.csa.com/partners/viewrecord.php?requester=gs&collection=TRD&recid=16153490EQ Reconstruction of missing response data for identification of higher modes] | ||
* Applied Bionics and Biomechanics [http://dx.doi.org/10.3233/ABB-2011-0023 Teletactile system based on mechanical properties estimation] | * Advances in Engineering Software [http://dx.doi.org/10.1016/j.advengsoft.2011.06.010 GeoPDEs: A research tool for Isogeometric Analysis of PDEs] | ||
* Proceedings of the National Academy of Sciences of the United States of America [http://dx.doi.org/10.1073/pnas.1012168108 Mean-field modeling of thalamocortical dynamics and a model-driven approach to EEG analysis] | * 2011 IEEE International Conference on Robotics and Biomimetics, ROBIO 2011 [http://dx.doi.org/10.1109/ROBIO.2011.6181612 From walking to running a natural transition in the SLIP model using the hopping gait] | ||
* Nucleic Acids Research [http://dx.doi.org/10.1093/nar/gkr422 A quantitative model of nucleosome dynamics] | * Applied Bionics and Biomechanics [http://dx.doi.org/10.3233/ABB-2011-0023 Teletactile system based on mechanical properties estimation] | ||
* Wiener Medizinische Wochenschrift [http://dx.doi.org/10.1007/s10354-011-0904-8 Role of optimization criterion in static asymmetric analysis of lumbar spine load] | * Proceedings of the National Academy of Sciences of the United States of America [http://dx.doi.org/10.1073/pnas.1012168108 Mean-field modeling of thalamocortical dynamics and a model-driven approach to EEG analysis] | ||
* Journal of Composite Materials [http://dx.doi.org/10.1177/0021998311401084 Micro-mechanical prediction of UD laminates behavior under combined compression up to failure: Influence of matrix degradation] | * Nucleic Acids Research [http://dx.doi.org/10.1093/nar/gkr422 A quantitative model of nucleosome dynamics] | ||
* Journal of Neuroscience Methods [http://dx.doi.org/10.1016/j.jneumeth.2011.05.009 Calcium signals: Analysis in time and frequency domains] | * ACM Transactions on Graphics [http://dx.doi.org/10.1145/2019627.2019635 Steady affine motions and morphs] | ||
* Proceedings - Annual Workshop on Interaction between Compilers and Computer Architectures, INTERACT [http://dx.doi.org/10.1109/INTERACT.2011.18 MATLAB parallelization through scalarization] | * Wiener Medizinische Wochenschrift [http://dx.doi.org/10.1007/s10354-011-0904-8 Role of optimization criterion in static asymmetric analysis of lumbar spine load] | ||
* 2011 Promotion and Innovation with New Technologies in Engineering Education, FINTDI 2011, Conference Proceedings [http://dx.doi.org/10.1109/FINTDI.2011.5936420 A review of teaching power system harmonics] | * Journal of Composite Materials [http://dx.doi.org/10.1177/0021998311401084 Micro-mechanical prediction of UD laminates behavior under combined compression up to failure: Influence of matrix degradation] | ||
* Physical Review E - Statistical, Nonlinear, and Soft Matter Physics [http://dx.doi.org/10.1103/PhysRevE.84.011916 Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals] | * Proceedings - 2011 IEEE International Symposium on Assembly and Manufacturing, ISAM 2011 [http://dx.doi.org/10.1109/ISAM.2011.5942315 Importance sampling based on adaptive principal component analysis] | ||
* Communications in Computer and Information Science [http://dx.doi.org/10.1007/978-3-642-21771-5_9 Analysis of time measurements in network systems using decomposition on subprocesses] | * International Journal for Numerical Methods in Engineering [http://dx.doi.org/10.1002/nme.3132 RK-Slim: Embedded Runge-Kutta without the excess baggage] | ||
* Proceedings of the ACM SIGPLAN Conference on Programming Language Design and Implementation (PLDI) [http://dx.doi.org/10.1145/1993498.1993517 Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors] | * Journal of Neuroscience Methods [http://dx.doi.org/10.1016/j.jneumeth.2011.05.009 Calcium signals: Analysis in time and frequency domains] | ||
* Journal of Aerospace Engineering [http://dx.doi.org/10.1061/(ASCE)AS.1943-5525.0000083 Experiments and cohesive zone model parameters for T650/AFR-PE-4/FM680-1 at high temperatures] | * IFIP Advances in Information and Communication Technology [http://dx.doi.org/10.1007/978-3-642-22285-6_34 Architecture of a Pan-European framework for integrated soil water erosion assessment] | ||
* Proceedings - Annual Workshop on Interaction between Compilers and Computer Architectures, INTERACT [http://dx.doi.org/10.1109/INTERACT.2011.18 MATLAB parallelization through scalarization] | |||
* 2011 Promotion and Innovation with New Technologies in Engineering Education, FINTDI 2011, Conference Proceedings [http://dx.doi.org/10.1109/FINTDI.2011.5936420 A review of teaching power system harmonics] | |||
* Physical Review E - Statistical, Nonlinear, and Soft Matter Physics [http://dx.doi.org/10.1103/PhysRevE.84.011916 Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals] | |||
* Communications in Computer and Information Science [http://dx.doi.org/10.1007/978-3-642-21771-5_9 Analysis of time measurements in network systems using decomposition on subprocesses] | |||
* Proceedings of the ACM SIGPLAN Conference on Programming Language Design and Implementation (PLDI) [http://dx.doi.org/10.1145/1993498.1993517 Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors] | |||
* Journal of Aerospace Engineering [http://dx.doi.org/10.1061/(ASCE)AS.1943-5525.0000083 Experiments and cohesive zone model parameters for T650/AFR-PE-4/FM680-1 at high temperatures] | |||
* Proceedings of the IEEE [http://dx.doi.org/10.1109/JPROC.2010.2103291 Enabling accurate cross-layer PHY/MAC/NET simulation studies of vehicular communication networks] | * Proceedings of the IEEE [http://dx.doi.org/10.1109/JPROC.2010.2103291 Enabling accurate cross-layer PHY/MAC/NET simulation studies of vehicular communication networks] | ||
* Journal of Mathematics and Music [http://dx.doi.org/10.1080/17459737.2011.614732 A few more words about James Tenney: Dissonant counterpoint and statistical feedback] | * Journal of Mathematics and Music [http://dx.doi.org/10.1080/17459737.2011.614732 A few more words about James Tenney: Dissonant counterpoint and statistical feedback] | ||
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* Journal of Wind Engineering and Industrial Aerodynamics [http://dx.doi.org/10.1016/j.jweia.2011.03.006 Fractional spectral moments for digital simulation of multivariate wind velocity fields] | * Journal of Wind Engineering and Industrial Aerodynamics [http://dx.doi.org/10.1016/j.jweia.2011.03.006 Fractional spectral moments for digital simulation of multivariate wind velocity fields] | ||
* Advances in Applied Probability [http://dx.doi.org/10.1239/aap/1308662485 Approximation of bounds on mixed-level orthogonal arrays] | * Advances in Applied Probability [http://dx.doi.org/10.1239/aap/1308662485 Approximation of bounds on mixed-level orthogonal arrays] | ||
* Electrochimica Acta [http://dx.doi.org/10.1016/j.electacta.2011.02.098 Reducing error and measurement time in impedance spectroscopy using model based optimal experimental design] | * IEEE Transactions on Antennas and Propagation [http://dx.doi.org/10.1109/TAP.2011.2122231 Demonstration of a dual-polarized phased-array feed] | ||
* Electrochimica Acta [http://dx.doi.org/10.1016/j.electacta.2011.02.098 Reducing error and measurement time in impedance spectroscopy using model based optimal experimental design] | |||
* Biomacromolecules [http://dx.doi.org/10.1021/bm200167n Infrared linear dichroism spectroscopy on amyloid fibrils aligned by molecular combing] | * Biomacromolecules [http://dx.doi.org/10.1021/bm200167n Infrared linear dichroism spectroscopy on amyloid fibrils aligned by molecular combing] | ||
* Chemical Science [http://dx.doi.org/10.1039/c0sc00423e Conformational states of nucleic acid-peptide complexes monitored by acoustic wave propagation and molecular dynamics simulation] | * Chemical Science [http://dx.doi.org/10.1039/c0sc00423e Conformational states of nucleic acid-peptide complexes monitored by acoustic wave propagation and molecular dynamics simulation] | ||
* Journal of the Acoustical Society of America [http://dx.doi.org/10.1121/1.3569714 Estimating the control parameters of an articulatory model from electromagnetic articulograph data] | * Journal of the Acoustical Society of America [http://dx.doi.org/10.1121/1.3569714 Estimating the control parameters of an articulatory model from electromagnetic articulograph data] | ||
* Fuzzy Sets and Systems [http://dx.doi.org/10.1016/j.fss.2011.01.003 Decision tree based fuzzy classifier of 1H magnetic resonance spectra from cerebrospinal fluid samples] | * Fuzzy Sets and Systems [http://dx.doi.org/10.1016/j.fss.2011.01.003 Decision tree based fuzzy classifier of 1H magnetic resonance spectra from cerebrospinal fluid samples] | ||
* Computational Management Science [http://dx.doi.org/10.1007/s10287-009-0110-y Shape-based scenario generation using copulas] | * Computational Management Science [http://dx.doi.org/10.1007/s10287-009-0110-y Shape-based scenario generation using copulas] | ||
* 2011 4th IFIP International Conference on New Technologies, Mobility and Security, NTMS 2011 - Proceedings [http://dx.doi.org/10.1109/NTMS.2011.5720629 Adaptive fuzzy-MAC for power reduction in Wireless Sensor Networks] | * 2011 4th IFIP International Conference on New Technologies, Mobility and Security, NTMS 2011 - Proceedings [http://dx.doi.org/10.1109/NTMS.2011.5720629 Adaptive fuzzy-MAC for power reduction in Wireless Sensor Networks] | ||
* Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.271109.150710s Reduction of linear systems of ODEs with optimal replacement variables] | * Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.271109.150710s Reduction of linear systems of ODEs with optimal replacement variables] | ||
* Optics Express [http://dx.doi.org/10.1364/OE.19.003284 Longitudinal mode multistability in Ring and Fabry-Pérot lasers: The effect of Spatial Hole Burning] | * Optics Express [http://dx.doi.org/10.1364/OE.19.003284 Longitudinal mode multistability in Ring and Fabry-Pérot lasers: The effect of Spatial Hole Burning] | ||
* Journal of Chemical Physics [http://dx.doi.org/10.1063/1.3533361 Photoelectron imaging of several 5d and 6p Rydberg states Xe 2 and improving the Xe 2 + I(12g) potential] | * Journal of Chemical Physics [http://dx.doi.org/10.1063/1.3533361 Photoelectron imaging of several 5d and 6p Rydberg states Xe 2 and improving the Xe 2 + I(12g) potential] | ||
* Chemical Physics Letters [http://dx.doi.org/10.1016/j.cplett.2010.12.028 Analysis of motion features for molecular dynamics simulation of proteins] | * Chemical Physics Letters [http://dx.doi.org/10.1016/j.cplett.2010.12.028 Analysis of motion features for molecular dynamics simulation of proteins] | ||
* Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp108059x In silico predictions of the temperature-dependent viscosities and electrical conductivities of functionalized and nonfunctionalized ionic liquids] | * Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp108059x In silico predictions of the temperature-dependent viscosities and electrical conductivities of functionalized and nonfunctionalized ionic liquids] | ||
* Journal of Molecular Biology [http://dx.doi.org/10.1016/j.jmb.2010.08.058 Probing designability via a generalized model of helical bundle geometry] | * Journal of Molecular Biology [http://dx.doi.org/10.1016/j.jmb.2010.08.058 Probing designability via a generalized model of helical bundle geometry] | ||
== 2010 == | == 2010 == | ||
* Wireless Networks, Vol. 16, No. 2, pp. 355-365, February 2010, [http://dx.doi.org/10.1007/s11276-008-0136-z Allocating data for broadcasting over wireless channels subject to transmission errors] | |||
* Wireless Networks, Vol. 16, No. 2, pp. 355-365, February 2010, [http://dx.doi.org/10.1007/s11276-008-0136-z Allocating data for broadcasting over wireless channels subject to transmission errors] | * Int. J. Numer. Anal. Model., 7(4):444–461, 2010, [http://www.math.ualberta.ca/ijnam/Volume7.htm Interior layers in a reaction–diffusion equation with a discontinuous diffusion coefficient] | ||
* Int. J. Numer. Anal. Model., 7(4):444–461, 2010, [http://www.math.ualberta.ca/ijnam/Volume7.htm Interior layers in a reaction–diffusion equation with a discontinuous diffusion coefficient] | * Comput. Methods Appl. Mech. Engrg., 199:1722–1732, 2010, [http://dx.doi.org/10.1016/j.cma.2010.01.018 Analytical and numerical study of photocurrent transients in organic polymer solar cells] ([http://sole.sf.net Octave package] used to perform the computations) | ||
* Comput. Methods Appl. Mech. Engrg., 199:1722–1732, 2010, [http://dx.doi.org/10.1016/j.cma.2010.01.018 Analytical and numerical study of photocurrent transients in organic polymer solar cells] ([http://sole.sf.net Octave package] used to perform the computations) | * Proc. European Performance Engineering Workshop (EPEW), Bertinoro, Italy, sep 2010, [http://dx.doi.org/10.1007/978-3-642-15784-4_4 Performance-Aware Reconfiguration of Software Systems] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-11.m Octave script] used to perform the computations and produce the plots) | ||
* Proc. European Performance Engineering Workshop (EPEW), Bertinoro, Italy, sep 2010, [http://dx.doi.org/10.1007/978-3-642-15784-4_4 Performance-Aware Reconfiguration of Software Systems] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-11.m Octave script] used to perform the computations and produce the plots) | * Proc. Analythical Stochastic Modelling Techniques and Applications (ASMTA'10), Cardiff, UK, jun 2010, [http://dx.doi.org/10.1007/978-3-642-13568-2_8 The qnetworks Toolbox: A Software Package for Queueing Networks Analysis] | ||
* Proc. Analythical Stochastic Modelling Techniques and Applications (ASMTA'10), Cardiff, UK, jun 2010, [http://dx.doi.org/10.1007/978-3-642-13568-2_8 The qnetworks Toolbox: A Software Package for Queueing Networks Analysis] | * 5th Int. Conf. on Comparing Design in Nature with Science and Engineering (2010). [http://arxiv.org/abs/1108.4448 Magneto-mechanical actuation model for fin-based locomotion][https://files.ifi.uzh.ch/ailab/people/carbajal/DeNa10/Manuscript_DeNa10.html HTML]. | ||
* 5th Int. Conf. on Comparing Design in Nature with Science and Engineering (2010). [http://arxiv.org/abs/1108.4448 Magneto-mechanical actuation model for fin-based locomotion][https://files.ifi.uzh.ch/ailab/people/carbajal/DeNa10/Manuscript_DeNa10.html HTML] | |||
* Algebraic and Geometric Topology [http://dx.doi.org/10.2140/agt.2010.10.2343 Symmetric homology of algebras] | * Algebraic and Geometric Topology [http://dx.doi.org/10.2140/agt.2010.10.2343 Symmetric homology of algebras] | ||
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* Autonomous Robots [http://dx.doi.org/10.1007/s10514-009-9160-9 HERB: A home exploring robotic butler] | * Autonomous Robots [http://dx.doi.org/10.1007/s10514-009-9160-9 HERB: A home exploring robotic butler] | ||
* International Journal of Electrical Engineering Education [http://www.ingentaconnect.com/content/manup/ijeee/2010/00000047/00000001/art00005 Experience with PSAT (Power System Analysis Toolbox) as free and open-source software for power system education and research] | * International Journal of Electrical Engineering Education [http://www.ingentaconnect.com/content/manup/ijeee/2010/00000047/00000001/art00005 Experience with PSAT (Power System Analysis Toolbox) as free and open-source software for power system education and research] | ||
== 2009 == | == 2009 == | ||
* Proceedings of APSIS, Charleston, SC (US), June 2009, [http://dx.doi.org/10.1109/APS.2009.5172087 Accuracy limits of in-room localisation using RSSI] | * Proceedings of APSIS, Charleston, SC (US), June 2009, [http://dx.doi.org/10.1109/APS.2009.5172087 Accuracy limits of in-room localisation using RSSI] | ||
* J. Comput. Phys., 228:770–1789, 2009, [http://dx.doi.org/10.1016/j.jcp.2008.11.010 Quantum corrected drift–diffusion models: Solution fixed point map and finite element approximation] | * J. Comput. Phys., 228:770–1789, 2009, [http://dx.doi.org/10.1016/j.jcp.2008.11.010 Quantum corrected drift–diffusion models: Solution fixed point map and finite element approximation] | ||
* Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_8 A patched mesh method for singularly perturbed reaction-diffusion equations] | * Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_8 A patched mesh method for singularly perturbed reaction-diffusion equations] | ||
* Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_9 Singularly perturbed reaction-diffusion problem with a boundary turning point] | * Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_9 Singularly perturbed reaction-diffusion problem with a boundary turning point] | ||
* Proceedings of the 2008 ECMI conference, London, volume 15 of Mathematics in Industry, 2009, [http://dx.doi.org/10.1007/978-3-642-12110-4_33 Patches of finite elements for singularly-perturbed diffusion reaction equations with discontinuous coefficients] | * Proceedings of the 2008 ECMI conference, London, volume 15 of Mathematics in Industry, 2009, [http://dx.doi.org/10.1007/978-3-642-12110-4_33 Patches of finite elements for singularly-perturbed diffusion reaction equations with discontinuous coefficients] | ||
* Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp9076036 Free-energy landscape of RNA hairpins constructed via dihedral angle principal component analysis] | * Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp9076036 Free-energy landscape of RNA hairpins constructed via dihedral angle principal component analysis] | ||
* IEEE Transactions on Semiconductor Manufacturing [http://dx.doi.org/10.1109/TSM.2009.2031791 A novel approach to analyze and model feature size effects in CMP] | * IEEE Transactions on Semiconductor Manufacturing [http://dx.doi.org/10.1109/TSM.2009.2031791 A novel approach to analyze and model feature size effects in CMP] | ||
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* ACM Transactions on Mathematical Software [http://dx.doi.org/10.1145/1486525.1486531 Algorithm 892: DISPMODULE, a Fortran 95 module for pretty-printing matrices] | * ACM Transactions on Mathematical Software [http://dx.doi.org/10.1145/1486525.1486531 Algorithm 892: DISPMODULE, a Fortran 95 module for pretty-printing matrices] | ||
* Stochastic Processes and their Applications [http://dx.doi.org/10.1016/j.spa.2008.02.009 Importance sampling for a Markov modulated queuing network] | * Stochastic Processes and their Applications [http://dx.doi.org/10.1016/j.spa.2008.02.009 Importance sampling for a Markov modulated queuing network] | ||
== 2008 == | == 2008 == | ||
* Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. PAMM, pages 10061 – 10064, 2008, [http://dx.doi.org/10.1002/pamm.200810061 Dynamical iteration schemes for multiscale simulation in nanoelectronics] | * Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. PAMM, pages 10061 – 10064, 2008, [http://dx.doi.org/10.1002/pamm.200810061 Dynamical iteration schemes for multiscale simulation in nanoelectronics] | ||
* Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. (PAMM), pages 10065–10068, 2008, [http://dx.doi.org/10.1002/pamm.200810065 Dynamical iteration schemes for coupled simulation in nanoelectronics] | * Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. (PAMM), pages 10065–10068, 2008, [http://dx.doi.org/10.1002/pamm.200810065 Dynamical iteration schemes for coupled simulation in nanoelectronics] | ||
* Journal of Biological Chemistry [http://dx.doi.org/10.1074/jbc.M806353200 Monitoring light-induced structural changes of channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy] | * Journal of Biological Chemistry [http://dx.doi.org/10.1074/jbc.M806353200 Monitoring light-induced structural changes of channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy] | ||
* Journal of Applied Physics [http://dx.doi.org/10.1063/1.3013904 Electro-optical modeling of bulk heterojunction solar cells] | * Journal of Applied Physics [http://dx.doi.org/10.1063/1.3013904 Electro-optical modeling of bulk heterojunction solar cells] | ||
* Clinical and Experimental Ophthalmology [http://dx.doi.org/10.1111/j.1442-9071.2008.01819.x Fourier analysis of digital retinal images in estimation of cataract severity] | * Clinical and Experimental Ophthalmology [http://dx.doi.org/10.1111/j.1442-9071.2008.01819.x Fourier analysis of digital retinal images in estimation of cataract severity] | ||
* Numerische Mathematik [http://dx.doi.org/10.1007/s00211-008-0176-4 Approximating optimization problems over convex functions] | * Numerische Mathematik [http://dx.doi.org/10.1007/s00211-008-0176-4 Approximating optimization problems over convex functions] | ||
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* IEEE Transactions on Biomedical Engineering [http://dx.doi.org/10.1109/TBME.2007.903713 Image analysis for microelectronic retinal prosthesis] | * IEEE Transactions on Biomedical Engineering [http://dx.doi.org/10.1109/TBME.2007.903713 Image analysis for microelectronic retinal prosthesis] | ||
* Composite Structures [http://dx.doi.org/10.1016/j.compstruct.2007.01.005 Finite element modeling and optimization of load transfer in multi-fastener joints using structural elements] | * Composite Structures [http://dx.doi.org/10.1016/j.compstruct.2007.01.005 Finite element modeling and optimization of load transfer in multi-fastener joints using structural elements] | ||
==2007== | ==2007== | ||
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* Physical Review A - Atomic, Molecular, and Optical Physics [http://dx.doi.org/10.1103/PhysRevA.73.032310 Maximizing nearest-neighbor entanglement in finitely correlated qubit chains] | * Physical Review A - Atomic, Molecular, and Optical Physics [http://dx.doi.org/10.1103/PhysRevA.73.032310 Maximizing nearest-neighbor entanglement in finitely correlated qubit chains] | ||
* Transportation Science [http://dx.doi.org/10.1287/trsc.1050.0119 Solving noisy, large-scale fixed-point problems and systems of nonlinear equations] | * Transportation Science [http://dx.doi.org/10.1287/trsc.1050.0119 Solving noisy, large-scale fixed-point problems and systems of nonlinear equations] | ||
==2005== | ==2005== | ||
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* Journal of Magnetic Resonance [http://dx.doi.org/10.1006/jmre.2001.2454 Specification and visualization of anisotropic interaction tensors in polypeptides and numerical simulations in biological solid-state NMR] | * Journal of Magnetic Resonance [http://dx.doi.org/10.1006/jmre.2001.2454 Specification and visualization of anisotropic interaction tensors in polypeptides and numerical simulations in biological solid-state NMR] | ||
= | =Books= | ||
[[ | * [http://www.network-theory.co.uk/octave/manual/ GNU Octave Manual Version 3], ISBN 0-9546120-6-X | ||
* [http://dx.doi.org/10.1007/978-3-642-12430-3 Scientific Computing with MATLAB and Octave], ISBN 978-3-642-12429-7 | |||
* [http://dx.doi.org/10.1007/978-3-642-20820-1_1 Numerical Methods for the Life Scientist], ISBN 978-3-642-20819-5 | |||
* [http://www.packtpub.com/gnu-octave-beginners-guide/book GNU Octave Beginners Guide], ISBN 1849513325 |