Editing Publications using Octave

=Articles=

== Pre-prints ==
* Preprint arXiv:1108.3206v2 [http://arxiv.org/abs/1108.3206 Modeling and frequency domain analysis of nonlinear compliant joints for a passive dynamic swimmer]
* Technical Report UBLCS-2012-02 [http://www.informatica.unibo.it/ricerca/technical-report/2012/UBLCS-2012-02 Queueing Networks Analysis with the qnetworks Toolbox]
* Preprint arXiv:1109.0397 [http://arxiv.org/abs/1109.0397 Auction-Based Resource Allocation in Digital Ecosystems] ([http://www.moreno.marzolla.name/publications/papers/1109.0397v1.zip Scripts] used in the paper)
* Technical Report UBLCS-2011-04 [http://www.informatica.unibo.it/ricerca/technical-report/2011/UBLCS-2011-04 Dynamic Power Management for QoS-Aware Applications] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2011-04.tar.gz Scripts] and data files used in the paper)
* Preprint arXiv:1104.5392 [http://arxiv.org/abs/1104.5392 A Framework for QoS-aware Execution of Workflows over the Cloud], to appear in proc. CLOSER 2012 ([http://www.moreno.marzolla.name/publications/papers/1104.5392v1.m Script] used in the paper)
* Technical Report UBLCS-2010-12 [http://www.informatica.unibo.it/ricerca/technical-report/2010/UBLCS-2010-12 Dynamic Scalability for Next Generation Gaming Infrastructures], to appear in ACM Computers in Entertainment ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-12.m Script] used in the paper)

== 2012 ==
* GNU Octave and reproducible research [http://dx.doi.org/10.1016/j.jprocont.2012.04.006 GNU Octave and reproducible research]
* Comput. Methods Appl. Mech. Engrg., 2012, [http://dx.doi.org/10.1016/j.cma.2012.06.018 Multiscale Modeling and Simulation of Organic Solar Cells] (Also available [http://arxiv.org/abs/1206.1440 at arXiv])
* 12th Int. Conf. on Adaptive Behaviour (2012). [http://arxiv.org/abs/1205.3668 Synthesis and Adaptation of Effective Motor Synergies for the Solution of Reaching Tasks]. ([https://files.ifi.uzh.ch/ailab/people/carbajal/DRD/drd.html package] used for this publication)
*  Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.190311.270112a System reduction using an LQR-inspired version of Optimal Replacement Variables]
*  Journal of Computational and Applied Mathematics [http://dx.doi.org/10.1016/j.cam.2012.03.014 A Test Set for stiff Initial Value Problem Solvers in the open source software R: Package deTestSet]
*  Biophysical Journal [http://dx.doi.org/10.1016/j.bpj.2012.04.051 Locomotion control of Caenorhabditis elegans through confinement]
*  Behavior Research Methods [http://dx.doi.org/10.3758/s13428-011-0168-7 OpenSesame: An open-source, graphical experiment builder for the social sciences]
*  Journal of Neural Engineering [http://dx.doi.org/10.1088/1741-2560/9/3/036008 Stimulus specificity of a steady-state visual-evoked potential-based brain-computer interface]
*  Nuclear Fusion [http://dx.doi.org/10.1088/0029-5515/52/6/063008 Detection of geodesic acoustic mode oscillations, using multiple signal classification analysis of Doppler backscattering signal on Tore Supra]
*  Simulation Modelling Practice and Theory [http://dx.doi.org/10.1016/j.simpat.2012.02.005 Development and implementation of hydro turbine and governor models in a free and open source software package]
*  Journal of Biomechanical Engineering [http://dx.doi.org/10.1115/1.4005849 Syrinx fluid transport: Modeling pressure-wave-induced flux across the spinal pial membrane]
*  Biochemistry [http://dx.doi.org/10.1021/bi3002709 Testing the nearest neighbor model for canonical RNA base pairs: Revision of GU parameters]
*  Journal of Chemical Theory and Computation [http://dx.doi.org/10.1021/ct200911w Construction of the free energy landscape of peptide aggregation from molecular dynamics simulations]
*  Modern Physics Letters B [http://dx.doi.org/10.1142/S0217984912500558 Dynamics on multilayered hyperbranched fractals through continuous time random walks]
*  IEEE Nuclear Science Symposium Conference Record [http://dx.doi.org/10.1109/NSSMIC.2011.6153827 Dose-free monitoring of radiotherapy treatments with scattered photons: First experimental results at a 6-MV Linac]
*  Journal of Physics: Conference Series [http://dx.doi.org/10.1088/1742-6596/341/1/012032 Integration of a neuroimaging processing pipeline into a pan-canadian computing grid]
*  Journal of Nanomaterials [http://dx.doi.org/10.1155/2012/109238 Design and construction of a one-dimensional DNA track for an artificial molecular motor]
*  Computing in Science and Engineering [http://dx.doi.org/10.1109/MCSE.2012.18 Applications of computational science: Data-intensive computing for student projects]
*  Computer Physics Communications [http://dx.doi.org/10.1016/j.cpc.2011.11.022 Numerical tools to validate stationary points of so (8) -gauged N = 8 D = 4 supergravity]
*  Advances in OptoElectronics [http://dx.doi.org/10.1155/2012/782150 Fundamental issues in manufacturing photovoltaic modules beyond the current generation of materials]
*  IEEE Transactions on Fuzzy Systems [http://dx.doi.org/10.1109/TFUZZ.2011.2168406 Zadehs extension principle for continuous functions of non-interactive variables: A parallel optimization approach]
*  Methods in Enzymology [http://dx.doi.org/10.1016/B978-0-12-391857-4.00020-3 Open source tools for fluorescent imaging]
*  Computer Physics Communications [http://dx.doi.org/10.1016/j.cpc.2011.08.003 An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells]

== 2011 ==
* Phys. Rev. E 83, 066707 (2011), [http://link.aps.org/doi/10.1103/PhysRevE.83.066707 Exploiting the passive dynamics of a compliant leg to develop gait transitions]
* Journal of Fluid Mechanics, volume 681, (2011), pp. 622-638. [http://www.math.missouri.edu/~stephen/preprints/jeff-stokes.html Perturbations of the coupled Jeffery-Stokes equations].
* International Journal for Numerical Methods in Fluids, 65(11-12):1407–1422, 2011 [http://dx.doi.org/10.1002/fld.2337 Isogeometric analysis: Stable elements for the 2d stokes equation].
* Numerical Algorithms, 56(1):107–127, January 2011, [http://dx.doi.org/10.1007/s11075-010-9376-y A parameter robust Petrov-Galerkin scheme for advection-diffusion-reaction equations].
* Advances in Engineering Software, 42(12):1020–1034, 2011, [http://dx.doi.org/10.1016/j.advengsoft.2011.06.010 Geopdes: A research tool for IsoGeometric Analysis of PDEs]. ([http://geopdes.sf.net Octave package] used discussed in this publication)
* Int. J. of Performability Engineering, 7(5):479–492, 2011 [http://www.ijpe-online.com/september-2011-p7-parsy-performance-aware-reconfiguration-of-software-systems.html PARSY: Performance-Aware Reconfiguration of Software Systems]
* IEEE Trans. Antennas and Propagation, 59(6):2047-2057, 2011, [http://dx.doi.org/10.1109/TAP.2011.2122231 Demonstration of a Dual-Polarized Phased-Array Feed].

*  IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum [http://dx.doi.org/10.1109/IPDPS.2011.389 p2 Matlab: Productive parallel matlab for the exascale]
*  Physics of Fluids [http://dx.doi.org/10.1063/1.3662449 Relaminarisation of Re τ = 100 channel flow with globally stabilising linear feedback control]
*  Journal of Machine Learning Research [http://www.stanford.edu/~ngoodman/papers/WSG-AIStats11.pdf Lightweight implementations of probabilistic programming languages via transformational compilation]
*  Proceedings of the ASME Design Engineering Technical Conference [http://dx.doi.org/10.1115/DETC2011-48228 uBlasCL: Architecture agnostic massively parallel Linear Algebra system]
*  <font color="red">SEKE 2011 - Proceedings of the 23rd International Conference on Software Engineering and Knowledge Engineering [ SC-xScript: An embedded script language for scientific computation in embedded systems]</font>
*  Proceedings - 2011 IEEE Electronics, Robotics and Automotive Mechanics Conference, CERMA 2011 [http://dx.doi.org/10.1109/CERMA.2011.28 Analysis of AVI files for mice behavior experiments in the Morris water maze]
*  Earthquake and Structures [http://md1.csa.com/partners/viewrecord.php?requester=gs&collection=TRD&recid=16153490EQ Reconstruction of missing response data for identification of higher modes]
*  Advances in Engineering Software [http://dx.doi.org/10.1016/j.advengsoft.2011.06.010 GeoPDEs: A research tool for Isogeometric Analysis of PDEs]
*  2011 IEEE International Conference on Robotics and Biomimetics, ROBIO 2011 [http://dx.doi.org/10.1109/ROBIO.2011.6181612 From walking to running a natural transition in the SLIP model using the hopping gait]
*  Applied Bionics and Biomechanics [http://dx.doi.org/10.3233/ABB-2011-0023 Teletactile system based on mechanical properties estimation]
*  Proceedings of the National Academy of Sciences of the United States of America [http://dx.doi.org/10.1073/pnas.1012168108 Mean-field modeling of thalamocortical dynamics and a model-driven approach to EEG analysis]
*  Nucleic Acids Research [http://dx.doi.org/10.1093/nar/gkr422 A quantitative model of nucleosome dynamics]
*  ACM Transactions on Graphics [http://dx.doi.org/10.1145/2019627.2019635 Steady affine motions and morphs]
*  Wiener Medizinische Wochenschrift [http://dx.doi.org/10.1007/s10354-011-0904-8 Role of optimization criterion in static asymmetric analysis of lumbar spine load]
*  Journal of Composite Materials [http://dx.doi.org/10.1177/0021998311401084 Micro-mechanical prediction of UD laminates behavior under combined compression up to failure: Influence of matrix degradation]
*  Proceedings - 2011 IEEE International Symposium on Assembly and Manufacturing, ISAM 2011 [http://dx.doi.org/10.1109/ISAM.2011.5942315 Importance sampling based on adaptive principal component analysis]
*  International Journal for Numerical Methods in Engineering [http://dx.doi.org/10.1002/nme.3132 RK-Slim: Embedded Runge-Kutta without the excess baggage]
*  Journal of Neuroscience Methods [http://dx.doi.org/10.1016/j.jneumeth.2011.05.009 Calcium signals: Analysis in time and frequency domains]
*  IFIP Advances in Information and Communication Technology [http://dx.doi.org/10.1007/978-3-642-22285-6_34 Architecture of a Pan-European framework for integrated soil water erosion assessment]
*  Proceedings - Annual Workshop on Interaction between Compilers and Computer Architectures, INTERACT [http://dx.doi.org/10.1109/INTERACT.2011.18 MATLAB parallelization through scalarization]
*  2011 Promotion and Innovation with New Technologies in Engineering Education, FINTDI 2011, Conference Proceedings [http://dx.doi.org/10.1109/FINTDI.2011.5936420 A review of teaching power system harmonics]
*  Physical Review E - Statistical, Nonlinear, and Soft Matter Physics [http://dx.doi.org/10.1103/PhysRevE.84.011916 Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals]
*  Communications in Computer and Information Science [http://dx.doi.org/10.1007/978-3-642-21771-5_9 Analysis of time measurements in network systems using decomposition on subprocesses]
*  Proceedings of the ACM SIGPLAN Conference on Programming Language Design and Implementation (PLDI) [http://dx.doi.org/10.1145/1993498.1993517 Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors]
*  Journal of Aerospace Engineering [http://dx.doi.org/10.1061/(ASCE)AS.1943-5525.0000083 Experiments and cohesive zone model parameters for T650/AFR-PE-4/FM680-1 at high temperatures]
*  Proceedings of the IEEE [http://dx.doi.org/10.1109/JPROC.2010.2103291 Enabling accurate cross-layer PHY/MAC/NET simulation studies of vehicular communication networks]
*  Journal of Mathematics and Music [http://dx.doi.org/10.1080/17459737.2011.614732 A few more words about James Tenney: Dissonant counterpoint and statistical feedback]
*  Applied Optics [http://dx.doi.org/10.1364/AO.50.003205 On the importance of path for phase unwrapping in synthetic aperture radar interferometry]
*  Physical Review E - Statistical, Nonlinear, and Soft Matter Physics [http://dx.doi.org/10.1103/PhysRevE.83.066707 Exploiting the passive dynamics of a compliant leg to develop gait transitions]
*  BMC Systems Biology [http://dx.doi.org/10.1186/1752-0509-5-97 Automated Bayesian model development for frequency detection in biological time series]
*  Journal of Wind Engineering and Industrial Aerodynamics [http://dx.doi.org/10.1016/j.jweia.2011.03.006 Fractional spectral moments for digital simulation of multivariate wind velocity fields]
*  Advances in Applied Probability [http://dx.doi.org/10.1239/aap/1308662485 Approximation of bounds on mixed-level orthogonal arrays]
*  IEEE Transactions on Antennas and Propagation [http://dx.doi.org/10.1109/TAP.2011.2122231 Demonstration of a dual-polarized phased-array feed]
*  Electrochimica Acta [http://dx.doi.org/10.1016/j.electacta.2011.02.098 Reducing error and measurement time in impedance spectroscopy using model based optimal experimental design]
*  Biomacromolecules [http://dx.doi.org/10.1021/bm200167n Infrared linear dichroism spectroscopy on amyloid fibrils aligned by molecular combing]
*  Chemical Science [http://dx.doi.org/10.1039/c0sc00423e Conformational states of nucleic acid-peptide complexes monitored by acoustic wave propagation and molecular dynamics simulation]
*  Journal of the Acoustical Society of America [http://dx.doi.org/10.1121/1.3569714 Estimating the control parameters of an articulatory model from electromagnetic articulograph data]
*  Fuzzy Sets and Systems [http://dx.doi.org/10.1016/j.fss.2011.01.003 Decision tree based fuzzy classifier of 1H magnetic resonance spectra from cerebrospinal fluid samples]
*  Computational Management Science [http://dx.doi.org/10.1007/s10287-009-0110-y Shape-based scenario generation using copulas]
*  2011 4th IFIP International Conference on New Technologies, Mobility and Security, NTMS 2011 - Proceedings [http://dx.doi.org/10.1109/NTMS.2011.5720629 Adaptive fuzzy-MAC for power reduction in Wireless Sensor Networks]
*  Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.271109.150710s Reduction of linear systems of ODEs with optimal replacement variables]
*  Optics Express [http://dx.doi.org/10.1364/OE.19.003284 Longitudinal mode multistability in Ring and Fabry-Pérot lasers: The effect of Spatial Hole Burning]
*  Journal of Chemical Physics [http://dx.doi.org/10.1063/1.3533361 Photoelectron imaging of several 5d and 6p Rydberg states Xe 2 and improving the Xe 2 + I(12g) potential]
*  Chemical Physics Letters [http://dx.doi.org/10.1016/j.cplett.2010.12.028 Analysis of motion features for molecular dynamics simulation of proteins]
*  Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp108059x In silico predictions of the temperature-dependent viscosities and electrical conductivities of functionalized and nonfunctionalized ionic liquids]
*  Journal of Molecular Biology [http://dx.doi.org/10.1016/j.jmb.2010.08.058 Probing designability via a generalized model of helical bundle geometry]

== 2010 ==
* Wireless Networks, Vol. 16, No. 2, pp. 355-365, February 2010, [http://dx.doi.org/10.1007/s11276-008-0136-z Allocating data for broadcasting over wireless channels subject to transmission errors]
* Int. J. Numer. Anal. Model., 7(4):444–461, 2010, [http://www.math.ualberta.ca/ijnam/Volume7.htm Interior layers in a reaction–diffusion equation with a discontinuous diffusion coefficient] 
* Comput. Methods Appl. Mech. Engrg., 199:1722–1732, 2010, [http://dx.doi.org/10.1016/j.cma.2010.01.018 Analytical and numerical study of photocurrent transients in organic polymer solar cells] ([http://sole.sf.net Octave package] used to perform the computations)
* Proc. European Performance Engineering Workshop (EPEW), Bertinoro, Italy, sep 2010, [http://dx.doi.org/10.1007/978-3-642-15784-4_4 Performance-Aware Reconfiguration of Software Systems] ([http://www.moreno.marzolla.name/publications/papers/UBLCS-2010-11.m Octave script] used to perform the computations and produce the plots)
* Proc. Analythical Stochastic Modelling Techniques and Applications (ASMTA'10), Cardiff, UK, jun 2010, [http://dx.doi.org/10.1007/978-3-642-13568-2_8 The qnetworks Toolbox: A Software Package for Queueing Networks Analysis]
* 5th Int. Conf. on Comparing Design in Nature with Science and Engineering (2010). [http://arxiv.org/abs/1108.4448 Magneto-mechanical actuation model for fin-based locomotion][https://files.ifi.uzh.ch/ailab/people/carbajal/DeNa10/Manuscript_DeNa10.html HTML].

*  Algebraic and Geometric Topology [http://dx.doi.org/10.2140/agt.2010.10.2343 Symmetric homology of algebras]
*  <font color="red">ICFC 2010 ICNC 2010 - Proceedings of the International Conference on Fuzzy Computation and International Conference on Neural Computation [ Development of a fuzzy calculator for continuous functions of non-interactive fuzzy variables]</font>
*  Journal of Computational and Applied Mathematics [http://dx.doi.org/10.1016/j.cam.2010.06.003 Modeling of an insurance system and its large deviations analysis]
*  2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10 [http://dx.doi.org/10.1109/IEMBS.2010.5627397 Real-time Experiment Interface for biological control applications]
*  INFORMS Journal on Computing [http://dx.doi.org/10.1287/ijoc.1090.0343 A heuristic for nonlinear global optimization]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [http://dx.doi.org/10.1007/978-3-642-13678-8_1 Probabilistic semantics and program analysis]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [http://dx.doi.org/10.1007/978-3-642-15784-4_4 Performance aware reconfiguration of software systems]
*  Biotechnology, Agronomy and Society and Environment [http://www.cabdirect.org/abstracts/20103309606.html Comparison of two drying models applied to corn drying in fluidized bed [Comparaison d'un modèle empirique et d'un modèle physique de séchage de grains de maïs en lit fluidisé]]
*  Spectroscopy Letters [http://dx.doi.org/10.1080/00387010.2010.510702 Quantitative infrared spectroscopy in the undergraduate laboratory via multivariate mixture analysis of a simulated analgesic]
*  European Radiology [http://dx.doi.org/10.1007/s00330-010-1853-0 Longitudinal study of a mouse model of chronic pulmonary inflammation using breath hold gated micro-CT]
*  Chemical Physics [http://dx.doi.org/10.1016/j.chemphys.2010.05.009 A classical Master equation approach to modeling an artificial protein motor]
*  ACM Transactions on Mathematical Software [http://dx.doi.org/10.1145/1824801.1824804 Increasing the reliability of adaptive quadrature using explicit interpolants]
*  Computer Applications in Engineering Education [http://dx.doi.org/10.1002/cae.20231 Teaching differential equations in different environments: A first approach]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [http://dx.doi.org/10.1007/978-3-642-13568-2_8 The qnetworks toolbox: A software package for queueing networks analysis]
*  Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences [http://dx.doi.org/10.1098/rspa.2009.0665 Stochastically forced water waves in a circular basin]
*  Performance Evaluation Review [http://dx.doi.org/10.1145/1811099.1811069 RSIO: Automatic user interaction detection and scheduling]
*  Journal of High Energy Physics [http://dx.doi.org/10.1007/JHEP03(2010)117 Quasinormal modes of massive charged avor branes]
*  Langmuir [http://dx.doi.org/10.1021/la100798c Viscoelastic modeling with interfacial slip of a protein monolayer electrode-adsorbed on an acoustic wave biosensor]
*  Journal of Biological Chemistry [http://dx.doi.org/10.1074/jbc.M109.080911 Biochemical basis of the interaction between cystic fibrosis transmembrane conductance regulator and immunoglobulin-like repeats of filamin]
*  Computers and Chemical Engineering [http://dx.doi.org/10.1016/j.compchemeng.2009.10.007 Data smoothing and numerical differentiation by a regularization method]
*  Physical Review A - Atomic, Molecular, and Optical Physics [http://dx.doi.org/10.1103/PhysRevA.81.033614 Resonant trapping in the transport of a matter-wave soliton through a quantum well]
*  High Pressure Research [http://dx.doi.org/10.1080/08957951003630449 Raman spectroscopy of triolein under high pressures]
*  Journal of Physics A: Mathematical and Theoretical [http://dx.doi.org/10.1088/1751-8113/43/10/105205 Relaxation dynamics of perturbed regular hyperbranched fractals]
*  Bulletin of the Polish Academy of Sciences: Technical Sciences [http://arxiv.org/abs/1006.1549 Extending scientific computing system with structural quantum programming capabilities]
*  Communications in Computational Physics [http://dx.doi.org/10.4208/cicp.2009.08.201 Simulation of spherulite growth using a comprehensive approach to modeling the first-order isotropic/smectic-a mesophase transition]
*  Computational Statistics and Data Analysis [http://dx.doi.org/10.1016/j.csda.2009.09.001 Grapham: Graphical models with adaptive random walk Metropolis algorithms]
*  Autonomous Robots [http://dx.doi.org/10.1007/s10514-009-9160-9 HERB: A home exploring robotic butler]
*  International Journal of Electrical Engineering Education [http://www.ingentaconnect.com/content/manup/ijeee/2010/00000047/00000001/art00005 Experience with PSAT (Power System Analysis Toolbox) as free and open-source software for power system education and research]

== 2009 ==
* Proceedings of APSIS, Charleston, SC (US), June 2009, [http://dx.doi.org/10.1109/APS.2009.5172087 Accuracy limits of in-room localisation using RSSI]
* J. Comput. Phys., 228:770–1789, 2009, [http://dx.doi.org/10.1016/j.jcp.2008.11.010 Quantum corrected drift–diffusion models: Solution fixed point map and finite element approximation]
* Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_8 A patched mesh method for singularly perturbed reaction-diffusion equations]
* Proceedings of BAIL, Limerick, 2008, volume 69 of LNCSE, 2009, [http://dx.doi.org/10.1007/978-3-642-00605-0_9 Singularly perturbed reaction-diffusion problem with a boundary turning point]
* Proceedings of the 2008 ECMI conference, London, volume 15 of Mathematics in Industry, 2009, [http://dx.doi.org/10.1007/978-3-642-12110-4_33 Patches of finite elements for singularly-perturbed diffusion reaction equations with discontinuous coefficients]
*  Journal of Physical Chemistry B [http://dx.doi.org/10.1021/jp9076036 Free-energy landscape of RNA hairpins constructed via dihedral angle principal component analysis]
*  IEEE Transactions on Semiconductor Manufacturing [http://dx.doi.org/10.1109/TSM.2009.2031791 A novel approach to analyze and model feature size effects in CMP]
*  Performance Evaluation [http://dx.doi.org/10.1016/j.peva.2009.05.001 System-theoretical algorithmic solution to waiting times in semi-Markov queues]
*  Computer Languages, Systems and Structures [http://dx.doi.org/10.1016/j.cl.2008.02.001 jLab: Integrating a scripting interpreter with Java technology for flexible and efficient scientific computation]
*  Journal of Geophysical Research B: Solid Earth [http://dx.doi.org/10.1029/2008JB006152 NW Australian intraplate seismicity and stress regime]
*  Journal of Chemometrics [http://dx.doi.org/10.1002/cem.1248 A comparison of nine PLS1 algorithms]
*  Measurement Science and Technology [http://dx.doi.org/10.1088/0957-0233/20/5/055801 Determining membrane permeability of giant phospholipid vesicles from a series of videomicroscopy images]
*  Mathematical Methods of Statistics [http://dx.doi.org/10.3103/S1066530709030028 A Bayesian approach to the estimation of maps between Riemannian manifolds. II: Examples]
*  Physical Review Special Topics - Accelerators and Beams [http://dx.doi.org/10.1103/PhysRevSTAB.12.081001 Tracking studies of the Compact Linear Collider collimation system]
*  Biological Cybernetics [http://dx.doi.org/10.1007/s00422-009-0325-6 Predictive feedback in human simulated pendulum balancing]
*  Bulletin of the Russian Academy of Sciences: Physics [http://dx.doi.org/10.3103/S1062873809050128 Regions of excessive flux of PeV cosmic rays]
*  Computing in Science and Engineering [http://dx.doi.org/10.1109/MCSE.2009.126 Scientific scripting for the java platform with jlab]
*  International Journal of Control [http://dx.doi.org/10.1080/00207170802474702 Constrained intermittent model predictive control]
*  Journal of Chromatography A [http://dx.doi.org/10.1016/j.chroma.2009.01.042 Suppressing the charged coupled device noise in univariate thin-layer videoscans: A comparison of several algorithms]
*  ACM Transactions on Mathematical Software [http://dx.doi.org/10.1145/1486525.1486531 Algorithm 892: DISPMODULE, a Fortran 95 module for pretty-printing matrices]
*  Stochastic Processes and their Applications [http://dx.doi.org/10.1016/j.spa.2008.02.009 Importance sampling for a Markov modulated queuing network]

== 2008 ==
* Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. PAMM, pages 10061 – 10064, 2008, [http://dx.doi.org/10.1002/pamm.200810061 Dynamical iteration schemes for multiscale simulation in nanoelectronics]
* Proceedings of the 79th GAMM meeting, volume 8 of Proc. Appl. Math. Mech. (PAMM), pages 10065–10068, 2008, [http://dx.doi.org/10.1002/pamm.200810065 Dynamical iteration schemes for coupled simulation in nanoelectronics]
*  Journal of Biological Chemistry [http://dx.doi.org/10.1074/jbc.M806353200 Monitoring light-induced structural changes of channelrhodopsin-2 by UV-visible and Fourier transform infrared spectroscopy]
*  Journal of Applied Physics [http://dx.doi.org/10.1063/1.3013904 Electro-optical modeling of bulk heterojunction solar cells]
*  Clinical and Experimental Ophthalmology [http://dx.doi.org/10.1111/j.1442-9071.2008.01819.x Fourier analysis of digital retinal images in estimation of cataract severity]
*  Numerische Mathematik [http://dx.doi.org/10.1007/s00211-008-0176-4 Approximating optimization problems over convex functions]
*  Medical Engineering and Physics [http://dx.doi.org/10.1016/j.medengphy.2008.02.002 Cervical spine biomechanics following implantation of a disc prosthesis]
*  IEEE Power and Energy Society 2008 General Meeting: Conversion and Delivery of Electrical Energy in the 21st Century, PES [http://dx.doi.org/10.1109/PES.2008.4596465 Towards a common model for studying critical infrastructure interdependencies]
*  3rd International Symposium on Wireless Pervasive Computing, ISWPC 2008, Proceedings [http://dx.doi.org/10.1109/ISWPC.2008.4556238 A novel low-complexity algorithm for linear MMSE MIMO receivers]
*  Studies in Computational Intelligence [http://dx.doi.org/10.1007/978-3-540-78534-7_10 Visualization and interactive exploration of large, multidimensional data sets]
*  Studies in Computational Intelligence [http://dx.doi.org/10.1007/978-3-540-76286-7_3 A versatile surrogate-assisted memetic algorithm for optimization of computationally expensive functions and its engineering applications]
*  IEEE Transactions on Education [http://dx.doi.org/10.1109/TE.2007.893354 An open source power system virtual laboratory: The PSAT case and experience]
*  Applied Mechanics Reviews [http://dx.doi.org/10.1115/1.2939371 A review of H∞ robust control of piezoelectric smart structures]
*  IEEE Transactions on Biomedical Engineering [http://dx.doi.org/10.1109/TBME.2007.903713 Image analysis for microelectronic retinal prosthesis]
*  Composite Structures [http://dx.doi.org/10.1016/j.compstruct.2007.01.005 Finite element modeling and optimization of load transfer in multi-fastener joints using structural elements]

==2007==
*  Water Science and Technology [http://dx.doi.org/10.2166/wst.2007.706 Kinetics of autothermal thermophilic aerobic digestion - Application and extension of Activated Sludge Model No 1 at thermophilic temperatures]
*  Western North American Naturalist [http://dx.doi.org/10.3398/1527-0904(2007)67%5B520:MSIRTS%5D2.0.CO;2 Moistened seeds increase rodent trap success]
*  EUROMICRO 2007 - Proceedings of the 33rd EUROMICRO Conference on Software Engineering and Advanced Applications, SEAA 2007 [http://dx.doi.org/10.1109/EUROMICRO.2007.32 GridIJ - A dynamic grid service architecture for scientific image processing]
*  IEEE International Conference on Intelligent Robots and Systems [http://dx.doi.org/10.1109/IROS.2007.4399546 Kernel-based visual servoing]
*  2007 IEEE Power Engineering Society General Meeting, PES [http://dx.doi.org/10.1109/PES.2007.385952 Application of the PSAT, an open source software, for educational and research purposes]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [http://www.springerlink.com/content/t2172g408365201x/ Abstract interpretation for worst and average case analysis]
*  Proceedings - IEEE International Conference on Cluster Computing, ICCC [http://dx.doi.org/10.1109/CLUSTR.2007.4629238 Performance analysis of a user-level memory server]
*  Proceedings of the Institution of Mechanical Engineers. Part I: Journal of Systems and Control Engineering [http://dx.doi.org/10.1243/09596518JSCE419 An adaptive learning algorithm for controlling a two-degree-of-freedom serial ball-and-socket actuator]
*  Lecture Notes in Control and Information Sciences [http://dx.doi.org/10.1007/978-3-540-72699-9_18 A nonlinear model predictive control framework as free software: Outlook and progress report]
*  Collection of Technical Papers - 2007 AIAA InfoTech at Aerospace Conference [http://www.aric.or.kr/treatise/journal/content.asp?idx=102058 Airfoil shape optimization by minimization of an expensive and discontinuous black-box function]
*  Periodica Polytechnica: Chemical Engineering [http://dx.doi.org/10.3311/pp.ch.2007-1.04 Connection between oxygen uptake rate and carbon dioxide evolution rate in aerobic thermophilic sludge digestion]
*  Journal of Fluid Mechanics [http://dx.doi.org/10.1017/S0022112007007318 Instability of the buoyancy layer on an evenly heated vertical wall]
*  Electronic Notes in Theoretical Computer Science [http://dx.doi.org/10.1016/j.entcs.2007.07.005 On Probabilistic Techniques for Data Flow Analysis]
*  Collection of Technical Papers - AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference [http://hdl.handle.net/2027.42/76240 T650/AFR-PE-4/FM680-1 mode I critical energy release rate at high temperatures: Experiments and numerical models]
*  Phytochemistry [http://dx.doi.org/10.1016/j.phytochem.2007.04.033 Design of substrate label for steady state flux measurements in plant systems using the metabolic network of Brassica napus embryos]
*  IET Software [http://dx.doi.org/10.1049/iet-sen:20060048 Scientific programming with Java classes supported with a scripting interpreter]
*  Genetics [http://dx.doi.org/10.1534/genetics.106.067215 Adaptation of a quantitative trait to a moving optimum]
*  Water Environment Research [http://dx.doi.org/10.2175/106143006X136810 Application of activated sludge model no. 3 for the modeling of organic matter biodegradation at thermophilic temperatures]
*  Computational Statistics [http://dx.doi.org/10.1007/s00180-007-0023-6 Excel :: COM :: R]
*  IEEE Transactions on Power Delivery [http://dx.doi.org/10.1109/TPWRD.2007.893389 Effects of sampling rate and ADC width on the accuracy of amplitude and phase measurements in power-quality monitoring]
*  Bulletin of the Russian Academy of Sciences: Physics [http://dx.doi.org/10.3103/S1062873807040132 Search for sources of cosmic rays in the region of the knee: Part II]

==2006==
*  Chemometrics and Intelligent Laboratory Systems [http://dx.doi.org/10.1016/j.chemolab.2006.04.025 How octave can replace Matlab in chemometrics]
*  41st International Universities Power Engineering Conference, UPEC 2006, Conference Procedings [http://dx.doi.org/10.1109/UPEC.2006.367635 System requirements of real time continuous data acquisition for power quality monitoring]
*  e-Science 2006 - Second IEEE International Conference on e-Science and Grid Computing [http://dx.doi.org/10.1109/E-SCIENCE.2006.261046 Grid services toolkit for process data processing]
*  Chemometrics and Intelligent Laboratory Systems [http://dx.doi.org/10.1016/j.chemolab.2006.04.014 Superresolution of hyperspectral images]
*  Computer Applications in Engineering Education [http://dx.doi.org/10.1002/cae.20080 A Web-based tool for control engineering teaching]
*  ANZIAM Journal [ Drainage after total knee replacement]
*  Protein Engineering, Design and Selection [http://dx.doi.org/10.1093/protein/gzl023 Consensus guided mutagenesis of Renilla luciferase yields enhanced stability and light output]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [ SCE toolboxes for the development of high-level parallel applications]
*  Space Science Reviews [http://dx.doi.org/10.1007/s11214-006-9106-x End-to-end modeling of the solar terrestrial system]
*  Publications of the Astronomical Society of Japan [ Milliarcsecond-scale spectral properties and jet motions in M 87]
*  Nucleic Acids Research [http://dx.doi.org/10.1093/nar/gkl109 Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by Escherichia coli DNA topoisomerase I]
*  Physiological Measurement [http://dx.doi.org/10.1088/0967-3334/27/5/S03 Uses and abuses of EIDORS: An extensible software base for EIT]
*  International Journal for Numerical and Analytical Methods in Geomechanics [http://dx.doi.org/10.1002/nag.427 Review of validation of the discontinuous deformation analysis (DDA) method]
*  Physical Review A - Atomic, Molecular, and Optical Physics [http://dx.doi.org/10.1103/PhysRevA.73.032310 Maximizing nearest-neighbor entanglement in finitely correlated qubit chains]
*  Transportation Science [http://dx.doi.org/10.1287/trsc.1050.0119 Solving noisy, large-scale fixed-point problems and systems of nonlinear equations]
==2005==
*  Collection of Technical Papers - AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference [ Comprehensive rotorcraft analysis: Past, present, and future]
*  Journal of Geophysical Research A: Space Physics [http://dx.doi.org/10.1029/2004JA010956 Analysis and visualization of space science model output and data with CISM-DX]
*  Applied Catalysis A: General [http://dx.doi.org/10.1016/j.apcata.2005.05.004 Simplified kinetic models of methanol oxidation on silver]
*  Automatica [http://dx.doi.org/10.1016/j.automatica.2005.03.013 Data compression for estimation of the physical parameters of stable and unstable linear systems]
*  IEEE Transactions on Power Systems [http://dx.doi.org/10.1109/TPWRS.2005.851911 An open source power system analysis toolbox]
*  BMC Bioinformatics [http://dx.doi.org/10.1186/1471-2105-6-118 Computing expectation values for RNA motifs using discrete convolutions]
*  IEEE Transactions on Signal Processing [http://dx.doi.org/10.1109/TSP.2004.842178 Design of discrete coefficient FIR filters by a fast entropy-directed deterministic annealing algorithm]
==2004==
*  Proceedings of the International Conference on Automation Technology for Off-road Equipment, ATOE 2004 [ RTK-GPS based autonomous crawler wagon control]
*  Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science) [ Data analysis of microarrays using SciCraft]
*  Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) [ Self-adaptive scouting-autonomous experimentation for systems biology]
*  Journal of Engineering Mechanics [http://dx.doi.org/10.1061/(ASCE)0733-9399(2004)130:3(249) Time integration in discontinuous deformation analysis]
==2003==
*  Physical Review Special Topics - Accelerators and Beams [http://dx.doi.org/10.1103/PhysRevSTAB.6.102801 Calibration of the Fermilab Booster ionization profile monitor]
*  SAR and QSAR in Environmental Research [http://dx.doi.org/10.1080/10629360310001623944 Zherlock: An open source data analysis software]
==2002==
*  Journal of Magnetic Resonance [http://dx.doi.org/10.1006/jmre.2001.2454 Specification and visualization of anisotropic interaction tensors in polypeptides and numerical simulations in biological solid-state NMR]

=Books=

* [http://www.network-theory.co.uk/octave/manual/ GNU Octave Manual Version 3], ISBN 0-9546120-6-X
* [http://dx.doi.org/10.1007/978-3-642-12430-3 Scientific Computing with MATLAB and Octave], ISBN 978-3-642-12429-7
* [http://dx.doi.org/10.1007/978-3-642-20820-1_1 Numerical Methods for the Life Scientist], ISBN 978-3-642-20819-5
* [http://www.packtpub.com/gnu-octave-beginners-guide/book GNU Octave Beginners Guide], ISBN 1849513325