Cookbook: Difference between revisions

From Octave
Jump to navigation Jump to search
(→‎Structures: use a less morbid example)
Line 6: Line 6:
You have a struct array with multiple fields, and you want to acess the value from a specific field from all elements. For example, you want to return the age from all pacients in the following case:
You have a struct array with multiple fields, and you want to acess the value from a specific field from all elements. For example, you want to return the age from all pacients in the following case:


   cases(1).name        = "Bob";
   samples = struct ("patient", {"Bob", "Kevin", "Bob" , "Andrew"},
  cases(1).age         = 45;
                    "age",    [ 45  ,  52    ,  45  ,  23    ],
   cases(1).contaminated = true;
                    "protein", {"H2B", "CDK2" , "CDK2", "Tip60" },
 
                    "tube, [ 3  ,  5    ,  2   ,  18    ]
  cases(2).name        = "Andrew";
                    );
  cases(2).age          = 21;
  cases(2).contaminated = true;
 
  cases(2).name        = "Kevin";
   cases(2).age          = 24;
  cases(2).contaminated = false;


==== Solution ====
==== Solution ====
Indexing the struct returns a comma separated list so use them to create a matrix.
Indexing the struct returns a comma separated list so use them to create a matrix.


   [cases(:).age]
   [samples(:).age]


This however does not keep the original structure of the data, instead returning all values in a single column. To fix this, use {{Codeline|reshape()}}.
This however does not keep the original structure of the data, instead returning all values in a single column. To fix this, use {{Codeline|reshape()}}.


   reshape ([cases(:).age], size (cases))
   reshape ([samples(:).age], size (samples))


==== Discussion ====
==== Discussion ====
Returning all values in a comma separated lists allows you to make anything out of them. If numbers are expected, create a matrix by enclosing them in square brackets. But if strings are to be expected, a cell array can also be easily generated with curly brackets
Returning all values in a comma separated lists allows you to make anything out of them. If numbers are expected, create a matrix by enclosing them in square brackets. But if strings are to be expected, a cell array can also be easily generated with curly brackets


   {cases(:).name}
   {samples(:).name}


You are also not limited to return all elements, you may use logical indexing from other fields to get values from the others:
You are also not limited to return all elements, you may use logical indexing from other fields to get values from the others:


   [cases([cases(:).age] > 34).contaminated]         ## return contaminated state from all cases older than 34
   [samples([samples(:).age] > 34).tube]                 ## return tube numbers from all samples from patients older than 34
   [cases(strcmp({cases(:).protein}, "CDK2").tube]  ## return all tube numbers with protein CDK2
   [samples(strcmp({samples(:).protein}, "CDK2").tube]  ## return all tube numbers for protein CDK2


== Input/output ==
== Input/output ==

Revision as of 18:43, 21 August 2012

An Octave cookbook. Each entry should go in a separate section and have the following subsection: problem, solution, discussion and maybe a see also.

Structures

Retrieve a field value from all entries in a struct array

Problem

You have a struct array with multiple fields, and you want to acess the value from a specific field from all elements. For example, you want to return the age from all pacients in the following case:

 samples = struct ("patient", {"Bob", "Kevin", "Bob" , "Andrew"},
                   "age",     [ 45  ,  52    ,  45   ,  23     ],
                   "protein", {"H2B", "CDK2" , "CDK2", "Tip60" },
                   "tube"   , [ 3   ,  5     ,  2    ,  18     ]
                   );

Solution

Indexing the struct returns a comma separated list so use them to create a matrix.

 [samples(:).age]

This however does not keep the original structure of the data, instead returning all values in a single column. To fix this, use reshape().

 reshape ([samples(:).age], size (samples))

Discussion

Returning all values in a comma separated lists allows you to make anything out of them. If numbers are expected, create a matrix by enclosing them in square brackets. But if strings are to be expected, a cell array can also be easily generated with curly brackets

 {samples(:).name}

You are also not limited to return all elements, you may use logical indexing from other fields to get values from the others:

 [samples([samples(:).age] > 34).tube]                 ## return tube numbers from all samples from patients older than 34
 [samples(strcmp({samples(:).protein}, "CDK2").tube]   ## return all tube numbers for protein CDK2

Input/output

Mathematics

Find if a number is even/odd

Problem

You have a number, or an array or matrix of them, and want to know if any of them is an odd or even number, i.e., their parity.

Solution

Check the remainder of a division by two. If the remainder is zero, the number is odd.

 mod (value, 2) ## 1 if odd, zero if even

Since mod() acceps a matrix, the following can be done:

 any  (mod (values, 2)) ## true if at least one number in values is even
 all  (mod (values, 2)) ## true if all numbers in values are odd
 
 any (!logical (mod (values, 2))) ## true if at least one number in values is even
 all (!logical (mod (values, 2))) ## true if all numbers in values are even

Discussion

Since we are checking for the remainder of a division, the first choice would be to use rem(). However, in the case of negative numbers mod() will still return a positive number making it easier for comparisons. Another alternative is to use bitand (X, 1) or bitget (X, 1) but those are a bit slower.

Note that this solution applies to integers only. Non-integers such as 1/2 or 4.201 are neither even nor odd. If the source of the numbers are unknown, such as user input, some sort of checking should be applied for NaN, Inf, or non-integer values.

See also

Find if a number is an integer.

Plotting

User input