Statistics package
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The statistics package is part of the Octave Forge project.
Core package
We need to decide what to do with the functions in the existing Forge package when they are not implemented or have been removed from the corresponding Matlab Toolbox:
To be decided
| function | decision/notes |
|---|---|
| anderson_darling_cdf | |
| cl_multinom | |
| dcov | |
| gevfit_lmom | |
| iwishpdf | |
| jsucdf | |
| jsupdf | |
| monotone_smooth | |
| normalise_distribution | |
| princomp | matlab says that the function has been removed but likely is a lie. We should keep it too. |
| qrandn | |
| runstest | |
| sigma_pts | not yet released |
| violin | |
| vmpdf | |
| vmrnd | |
| wishpdf |
Matlab incompatible
These functions have the same name as Matlab functions but have a different interface
- boxplot
- gpcdf
- gpinv
- gppdf
- gprnd
Can be reused in other functions
| forge function | matlab counterpart |
|---|---|
| anderson_darling_test | adtest |
| bbscdf | BirnbaumSaundersDistribution class |
| bbsinv | BirnbaumSaundersDistribution class |
| bbspdf | BirnbaumSaundersDistribution class |
| bbsrnd | BirnbaumSaundersDistribution class |
| binotest | binofit |
| burrcdf | BurrDistribution class |
| burrinv | BurrDistribution class |
| burrpdf | BurrDistribution class |
| burrrnd | BurrDistribution class |
| nakacdf | NakagamiDistribution class |
| nakainv | NakagamiDistribution class |
| nakapdf | NakagamiDistribution class |
| nakarnd - should be used to implement the | NakagamiDistribution class |
| regress_gp | RegressionGP class |
| repanova | RepeatedMeasuresModel.ranova |
| tricdf | TriangularDistribution class |
| triinv | TriangularDistribution class |
| tripdf | TriangularDistribution class |
| trirnd | TriangularDistribution class |
| logistic_cdf | LogisticDistribution class |
| logistic_inv | LogisticDistribution class |
| logistic_pdf | LogisticDistribution class |
| logistic_rnd | LogisticDistribution class |
| stdnormal_cdf | NormalDistribution class |
| stdnormal_inv | NormalDistribution class |
| stdnormal_pdf | NormalDistribution class |
| stdnormal_rnd | NormalDistribution class |
| anova | anova method in different *Model classes |
| manova | manova methods in different *Model classes |
| bartlett_test | barttest |
| kolmogorov_smirnov_test | ktest |
| kolmogorov_smirnov_test_2 | ktest2 |
| kruskal_wallis_test | kruskalwallis |
Ready to go
These functions seem to be Matlab compatible
- anovan
- betastat
- binostat
- binotest
- canoncorr
- caseread
- casewrite
- cdf
- chi2stat
- cmdscale
- combnk
- copulacdf
- copulapdf
- copularnd
- crossval
- @cvpartition
- dendrogram
- expstat
- ff2n
- fitgmdist
- fstat
- fullfact
- gamfit
- gamlike
- gamstat
- geomean
- geostat
- gevcdf
- gevfit
- gevinv
- gevlike
- gevpdf
- gevrnd
- gevstat
- gmdistribution
- grp2idx
- harmmean
- hist3
- histfit
- hmmestimate
- hmmgenerate
- hmmviterbi
- hygestat
- iwishrnd
- jackknife
- kmeans
- linkage
- lognstat
- mad
- mahal
- mnpdf
- mnrnd
- mvncdf
- mvnpdf
- mvnrnd
- mvtcdf
- mvtpdf
- mvtrnd
- nanmax
- nanmean
- nanmedian
- nanmin
- nanstd
- nansum
- nanvar
- nbinstat
- normplot
- normstat
- pcacov
- pcares
- pdist2
- pdist
- plsregress
- poisstat
- random
- randsample
- raylcdf
- raylinv
- raylpdf
- raylrnd
- raylstat
- regress
- signtest
- squareform
- stepwisefit
- tabulate
- tblread
- tblwrite
- trimmean
- tstat
- ttest2
- ttest
- unidstat
- unifstat
- vartest2
- vartest
- wblstat
- wishrnd
- ztest
- prctile
- qqplot
- betacdf
- betainv
- betapdf
- betarnd
- binocdf
- binoinv
- binopdf
- binornd
- chi2cdf
- chi2inv
- chi2pdf
- chi2rnd
- expcdf
- expinv
- exppdf
- exprnd
- fcdf
- finv
- fpdf
- frnd
- gamcdf
- gaminv
- gampdf
- gamrnd
- geocdf
- geoinv
- geopdf
- geornd
- hygecdf
- hygeinv
- hygepdf
- hygernd
- logncdf
- logninv
- lognpdf
- lognrnd
- nbincdf
- nbininv
- nbinpdf
- nbinrnd
- normcdf
- norminv
- normpdf
- normrnd
- poisscdf
- poissinv
- poisspdf
- poissrnd
- tcdf
- tinv
- tpdf
- trnd
- unidcdf
- unidinv
- unidpdf
- unidrnd
- unifcdf
- unifinv
- unifpdf
- unifrnd
- wblcdf
- wblinv
- wblpdf
- wblrnd
In external packages
bootci, bootstrp are implemented in the statistics-bootstrap package
Development
Follows an incomplete list of stuff missing in the statistics package to be matlab compatible. Bugs are not listed here, search and report them on the bug tracker instead.
this entire section is about the current development version. If a Matlab function is missing from the list and does not appear on the current release of the package, confirm that is also missing in the development sources before adding it.
Missing functions
- ClassificationBaggedEnsemble
- ClassificationDiscriminant
- ClassificationDiscriminant.fit
- ClassificationEnsemble
- ClassificationKNN
- ClassificationKNN.fit
- ClassificationPartitionedEnsemble
- ClassificationPartitionedModel
- ClassificationTree
- ClassificationTree.fit
- CompactClassificationDiscriminant
- CompactClassificationEnsemble
- CompactClassificationTree
- CompactRegressionEnsemble
- CompactRegressionTree
- CompactTreeBagger
- ExhaustiveSearcher
- GeneralizedLinearModel
- GeneralizedLinearModel.fit
- GeneralizedLinearModel.stepwise
- KDTreeSearcher
- LinearMixedModel
- LinearMixedModel.fit
- LinearMixedModel.fitmatrix
- LinearModel
- LinearModel.fit
- LinearModel.stepwise
- NaiveBayes
- NaiveBayes.fit
- NonLinearModel
- NonLinearModel.fit
- ProbDistUnivKernel
- ProbDistUnivParam
- RegressionBaggedEnsemble
- RegressionEnsemble
- RegressionPartitionedEnsemble
- RegressionPartitionedModel
- RegressionTree
- RegressionTree.fit
- TreeBagger
- addTerms
- addedvarplot
- addlevels
- adtest
- andrewsplot
- anova2
- ansaribradley
- aoctool
- barttest
- bbdesign
- betafit
- betalike
- binofit
- biplot
- candexch
- candgen
- capability
- capaplot
- ccdesign
- cdfplot
- cell2dataset
- chi2gof
- cholcov
- classify
- classregtree
- clustering.evaluation.CalinskiHarabaszEvaluation
- clustering.evaluation.DaviesBouldinEvaluation
- clustering.evaluation.GapEvaluation
- clustering.evaluation.SilhouetteEvaluation
- coefCI
- coefTest
- compact
- compare
- controlrules
- copulafit
- copulaparam
- copulastat
- cordexch
- corrcov
- covarianceParameters
- coxphfit
- createns
- crosstab
- dataset
- dataset2cell
- dataset2struct
- dataset2table
- datasetfun
- daugment
- dcovary
- designMatrix
- devianceTest
- dfittool
- disttool
- droplevels
- dummyvar
- dwtest
- ecdf
- ecdfhist
- evcdf
- evfit
- evinv
- evlike
- evpdf
- evrnd
- evstat
- export
- factoran
- fitdist
- fitensemble
- fitglm
- fitlm
- fitlme
- fitlmematrix
- fitnlm
- fitted
- fixedEffects
- fracfact
- fracfactgen
- friedman
- fsurfht
- gagerr
- getlabels
- getlevels
- gline
- glmfit
- glmval
- glyphplot
- gname
- gpcdf
- gpfit
- gpinv
- gplike
- gplotmatrix
- gppdf
- gprnd
- gpstat
- grpstats
- haltonset
- hmmdecode
- hmmtrain
- hougen
- icdf
- interactionplot
- invpred
- islevel
- isundefined
- jbtest
- johnsrnd
- join
- knnsearch
- ksdensity
- kstest
- kstest2
- labels
- lasso
- lassoPlot
- lassoglm
- levelcounts
- leverage
- lhsdesign
- lhsnorm
- lillietest
- linhyptest
- lognfit
- lognlike
- lsline
- mahal
- maineffectsplot
- makedist
- manova1
- manovacluster
- mat2dataset
- mdscale
- mergelevels
- mle
- mlecov
- mnrfit
- mnrval
- multcompare
- multivarichart
- mvregress
- mvregresslike
- nancov
- nbinfit
- ncfcdf
- ncfinv
- ncfpdf
- ncfrnd
- ncfstat
- nctcdf
- nctinv
- nctpdf
- nctrnd
- nctstat
- ncx2cdf
- ncx2inv
- ncx2rnd
- ncx2stat
- negloglik
- nlinfit
- nlintool
- nlmefit
- nlmefitsa
- nlparci
- nlpredci
- nnmf
- nominal
- normfit
- normlike
- normspec
- ordinal
- parallelcoords
- paramci
- paretotails
- partialcorr
- partialcorri
- pearsrnd
- perfcurve
- plotAdded
- plotAdjustedResponse
- plotDiagnostics
- plotEffects
- plotInteraction
- plotResiduals
- plotSlice
- poissfit
- polytool
- ppca
- predict
- prob.BetaDistribution
- prob.BinomialDistribution
- prob.BirnbaumSaundersDistribution
- prob.BurrDistribution
- prob.ExponentialDistribution
- prob.ExtremeValueDistribution
- prob.GammaDistribution
- prob.GeneralizedExtremeValueDistribution
- prob.GeneralizedParetoDistribution
- prob.InverseGaussianDistribution
- prob.KernelDistribution
- prob.LogisticDistribution
- prob.LoglogisticDistribution
- prob.LognormalDistribution
- prob.MultinomialDistribution
- prob.NakagamiDistribution
- prob.NegativeBinomialDistribution
- prob.NormalDistribution
- prob.PiecewiseLinearDistribution
- prob.PoissonDistribution
- prob.RayleighDistribution
- prob.RicianDistribution
- prob.TriangularDistribution
- prob.UniformDistribution
- prob.WeibullDistribution
- prob.tLocationScaleDistribution
- probplot
- procrustes
- proflik
- qrandset
- qrandstream
- randomEffects
- randtool
- rangesearch
- ranksum
- raylfit
- rcoplot
- refcurve
- refline
- regstats
- relieff
- removeTerms
- residuals
- response
- ridge
- robustdemo
- robustfit
- rotatefactors
- rowexch
- rsmdemo
- rstool
- sampsizepwr
- scatterhist
- sequentialfs
- setlabels
- signrank
- sobolset
- statget
- statset
- step
- stepwise
- stepwiseglm
- stepwiselm
- struct2dataset
- surfht
- svmclassify
- svmtrain
- table2dataset
- tabulate
- tdfread
- tiedrank
- truncate
- unifit
- vartestn
- wblfit
- wbllike
- x2fx
- xptread
Missing options
- explike: censoring and frequency aren't yet implemented